PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G29200.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 320aa    MW: 33538 Da    PI: 4.9273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G29200.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15171216555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  OGLUM03G29200.1 171 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 216
                      8899**********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MDDSSLFLQW VVSTLQHQDP AAVAVVADDD ATFFSFQELC DAEEVVVVPV QEEVITEAHG  60
GGASSCRSTG NVGGGGGIGL AVAVDEHGGW SRSPNPGARP PSGGCGSNNL PLMSWDFSAA  120
SVAVQVQPNG GGSGGAPEMA YGSPPAAGGS TTRKTSAPTA AAAAAYAQLE HVVAERKRRE  180
KINQRFMELS AVIPKLKKMD KATILSDAAS YIRELQEKLK ALEEQAAARV TEAAMATPSP  240
ARAMNHLPVP PEIEVRCSPT NNVVMVRIHC ENGEGVIVRI LAEVEEIHLR IINANVMPFL  300
DQGATMIITI AAKASSSLLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
2176181RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-24bHLH family protein