PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G29270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 376aa MW: 39058.6 Da PI: 7.3781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G29270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.2	1.9e-15	182	228	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL Av+Y+k+Lq OGLUM03G29270.1 182 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 228 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEDSSLFMEW AMETLQHLHP LPATPPPAAG DNATFPSLQA LRESSVSQNG MAPPEPTAHE 60 GHRASNSWSS GDTDSVSGGG GAAMEHDGWS TSPNSVRCAP GGGGGGVWPV SWNFSSAMTQ 120 PCNEATPPNP PTTTRARHGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG SGSSSAAPYA 180 QEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKELQEK LSELEQHQNG 240 GVESAILLKK PCIAASSSEG GCPASASAVA GSSSSGTTAR SSLPEIEAKI SHGNVMVRIH 300 SENNGKGSLV RLLAAVEGLH LGITHTNVMP FSACTAVITI MAKVEDGVSV TAEDIVGKLN 360 IVLQQNSRNS ARETKS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEDSSLFMEW AMETLQHLHP LPATPPPAAG DNATFPSLQA LRESSVSQNG MAPPEPTAHE  60
GHRASNSWSS GDTDSVSGGG GAAMEHDGWS TSPNSVRCAP GGGGGGVWPV SWNFSSAMTQ  120
PCNEATPPNP PTTTRARHGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG SGSSSAAPYA  180
QEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKELQEK LSELEQHQNG  240
GVESAILLKK PCIAASSSEG GCPASASAVA GSSSSGTTAR SSLPEIEAKI SHGNVMVRIH  300
SENNGKGSLV RLLAAVEGLH LGITHTNVMP FSACTAVITI MAKVEDGVSV TAEDIVGKLN  360
IVLQQNSRNS ARETKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	192	ERKRRE
2	188	193	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-29	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G29270.1