PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G29480.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 425aa MW: 47684.9 Da PI: 9.8378

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G29480.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.3	6.6e-24	151	195	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ OGLUM03G29480.1 151 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 195 79****************************************997 PP
2	QLQ	57.2	4.9e-20	92	127	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k OGLUM03G29480.1 92 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 127 9******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MFADFSAAAM ELGEVLGLQG LTVPSTKEGD LSLIKRAAAG SFTQAAAASY PSPFLDEQKM 60 LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY LNAKAPIPSS 120 LLISISKSFR SSANRMSWRP LYQGFPSADS DPEPGRCRRT DGKKWRCSKE AMADHKYCER 180 HINRNRHRSR KPVENQSRKT VKETPCAGSL PSSVGQGSFK KAKVNEMKPG SISYWTDSLN 240 RTMANKEKGN KAAEENNGPL LNLTNQQPTL SLFSQLKQQN KPEKFNTAGD SESISSNTML 300 KPWENSNQQN NKSIPFTKMH DRGCLQSVLQ NFSLPKDKKM EFQKSKDSNV MTVPSTFYSS 360 EDPRVSCHAP NMAQMQEDSI SSSWEMPQGG PLGEILTNSK NPDDSIMKPE TRPYGWLLNL 420 EDHAM

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MFADFSAAAM ELGEVLGLQG LTVPSTKEGD LSLIKRAAAG SFTQAAAASY PSPFLDEQKM  60
LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY LNAKAPIPSS  120
LLISISKSFR SSANRMSWRP LYQGFPSADS DPEPGRCRRT DGKKWRCSKE AMADHKYCER  180
HINRNRHRSR KPVENQSRKT VKETPCAGSL PSSVGQGSFK KAKVNEMKPG SISYWTDSLN  240
RTMANKEKGN KAAEENNGPL LNLTNQQPTL SLFSQLKQQN KPEKFNTAGD SESISSNTML  300
KPWENSNQQN NKSIPFTKMH DRGCLQSVLQ NFSLPKDKKM EFQKSKDSNV MTVPSTFYSS  360
EDPRVSCHAP NMAQMQEDSI SSSWEMPQGG PLGEILTNSK NPDDSIMKPE TRPYGWLLNL  420
EDHAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-34	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G29480.1