PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G30480.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 731aa    MW: 82071.6 Da    PI: 6.9173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G30480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.12.4e-1193567271374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d + a++lL++++++a p+gd  qRla +f+ +L+arla+++s+ly++l +++t+    s+ l+a++l+  ++P+ ++s
  OGLUM03G30480.1 356 LRTLLIHCAQAVAADDRRTANELLKQIRQHAKPNGDGSQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLS 446
                      6789************************************************************999999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L +R++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae++gvpfe++  +a+++
  OGLUM03G30480.1 447 HFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLFKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAEKIGVPFEYQG-IASKW 539
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le+++pr++ 
  OGLUM03G30480.1 540 ETIRVEDLNIKKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDA 633
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + ++e+sg+l++gWk+r ++++S W+
  OGLUM03G30480.1 634 QRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVLKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 727
                      *****************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MGLDNNFGEL SGMFCGLSYD GYTDHGSQSD YFRFADPQPA IVPQMDAGPS SAASSTASRA  60
AVSSGTDNPE DWEFISDESL NYISRMLMEE DIDEKVSMYQ EESAALRAAA KPFYDILGHK  120
FPPSPDRQLV AWPLDSPSES STSSYPHSLA SSVTSSNISG AVDSSQRRYV GHSEYRSLSG  180
HSSQPPVGPS SDVCNAMETL EDPLISNGRI PEYLFESFPT WDFRRGVDEA QKFLPGSDKV  240
VIDLEAGGVA KHQEAGKAIS LNGSKAEVLK VKKNRQSEDL DVMEGRNSKQ SAFCSDEPDW  300
IEMFDVLLRQ TEKKATDLRK MMRFEASKNS QVAQPKGPSG TRSRGRKPTK KDVVDLRTLL  360
IHCAQAVAAD DRRTANELLK QIRQHAKPNG DGSQRLAYCF ADGLEARLAG TGSQLYHKLV  420
AKRTTASDML KAYHLYLAAC PFKRLSHFLS NQTILSLTKN ASKVHIIDFG IYFGFQWPCL  480
IRRLFKREGG PPKLRITGID VPQPGFRPTE RIEETGQRLA EYAEKIGVPF EYQGIASKWE  540
TIRVEDLNIK KDEVVIVNCL YRFRNLIDET VAVDSPRNRV LNTIRQVNPA IFIHGIVNGS  600
YSVPFFITRF REALFHFSAL FDMLETTVPR DDAQRALIER DLFGREALNV IACEGSDRVE  660
RPETYKQWQV RNLRAGFVQS PLNQDIVLKA KDKVKDIYHK DFVIDEDSGW LLQGWKGRII  720
YAISTWKPNN N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein