PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G30900.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 447aa    MW: 46303.6 Da    PI: 4.7689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G30900.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013252272121
                      EEETTTTEEESSHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                      ++C++Cg++F ++  L  H  
  OGLUM03G30900.1 252 FVCSICGRCFGSHQALGGHVL 272
                      89********99998877765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVDRYVFL ARQPAPPVDR  60
DDADADAGAE GTGCCKRKRR VVDDDDDGDG FSPRQPALLD GSGGQAAEEE DDDEGSSDDD  120
DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI  180
AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAAAA  240
AAEAAERASK RFVCSICGRC FGSHQALGGH VLGHKKKAKN AAIAAAARDA TTTAVTEAVA  300
PASQRQSFFA ADINGQDERG CDGAEGSRYD DDEEKSPVVV DDVAHGDGEE NDKIAGVVVA  360
SSHDGDSDVG KMKIVQHKCD ECGKVCLTGQ ALGGHMSKHR RTRPAANGGE GPATATVADG  420
GAQTVRLIGD DVCLQRAVAI AGFHSAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193RKRRR