PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G32210.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 357aa MW: 37975.8 Da PI: 5.7583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G32210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	178	225	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq OGLUM03G32210.1 178 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 225 67999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEADAAAAA AAMVQQQQYA 60 AAAAEHRPRK AAKVNTSWDS CITEQGSPAD SSSPTILSFG GHADAAAAAA FASAGQAQSA 120 PYYGGASAAA LKPKQELDAA AAPFSQARPV KRSYDAMVAA DVAKAPAAAA SRPASQNQEH 180 ILAERKRREK LSQRFIALSK IVPGLKKMDK ASVLGDAIKY VKQLQDQVKG LEEEARRRPV 240 EAAVLVKKSQ LSADDDDGSS CDENFDGGEA TAGLPEIEAR VSERTVLVKI HCENRKGALI 300 TALSEVETIG LTIMNTNVLP FTSSSLDITI MATAGENFSL SVKDIVKKLN QAFKLSL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEADAAAAA AAMVQQQQYA  60
AAAAEHRPRK AAKVNTSWDS CITEQGSPAD SSSPTILSFG GHADAAAAAA FASAGQAQSA  120
PYYGGASAAA LKPKQELDAA AAPFSQARPV KRSYDAMVAA DVAKAPAAAA SRPASQNQEH  180
ILAERKRREK LSQRFIALSK IVPGLKKMDK ASVLGDAIKY VKQLQDQVKG LEEEARRRPV  240
EAAVLVKKSQ LSADDDDGSS CDENFDGGEA TAGLPEIEAR VSERTVLVKI HCENRKGALI  300
TALSEVETIG LTIMNTNVLP FTSSSLDITI MATAGENFSL SVKDIVKKLN QAFKLSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	ERKRRE
2	185	190	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	2e-46	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G32210.1