PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G33270.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 301aa    MW: 33021.7 Da    PI: 5.2973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G33270.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08134178554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  OGLUM03G33270.2 134 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 178
                      889**********************8.....6999999*********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MQMESYYGAF HADEAAFFFP HHVPASPELP FGLIASPEPE PEPEQAAAEA RQSAFQEYGG  60
AVHAGAPAAA GAVTTGGTNI HRRVMDVLGR MGGGGGGGGG EKGEGEEMEE EEEVPQRRRR  120
GQGADVESSR GFRHMMRERQ RREKLSQSYA DLYAMVSSRS KGDKNSIVQS AAIYIHELKV  180
ARDQLQRRNE ELKAQIMGHD EQQPCVTVQF EVDEPSSSID SMIAALRRLK GMSVKARGIR  240
SSMSGNRLWT EMNVETTIAA CEVEKAVEEA LKEVERNQPD SDAPFPGSKG WTQTSHVQNV  300
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-20bHLH family protein