PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G33530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 398aa MW: 43480.7 Da PI: 5.0984

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G33530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.4	5.3e-34	51	141	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye+++d+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkkell+ OGLUM03G33530.1 51 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKELLK 135 9**************************************************************999.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +ikr++ OGLUM03G33530.1 136 TIKRRR 141 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MNPLRVIVKE EELDFAAAAA AGEGSPSSWA VGVMDLPRPM EGLGEAGPPP FLCKTYEVVD 60 DPGTDTVISW GFAGNSFVVW DANAFAAVLL PRYFKHSNFS SFVRQLNTYG FRKVDPDRWE 120 FANEGFLRGK KELLKTIKRR RPPPSSPPSS SSSSSSSQHQ QQPAAACLEV GQFGRDGVVN 180 RLQRDKSVLI AEVVKLRQEQ QTTRAQMQAM EERISAAEQK QQQMTVFLAR AMKNPGFLQM 240 LVDRQAGQHG ARNRVLEDAL SKKRRRPIEY LLTRNGETCA AGESAAMLAA DGVAEPDGDT 300 TPRGDGGGGG DTESFWMQLL SLGLEEKQRE DGVAGGVQES NSGGADVDND EEDDDDDVDV 360 LVQSIYHLSP NIKKVVPSSS NLGVLRGRSI RLHLYLVS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MNPLRVIVKE EELDFAAAAA AGEGSPSSWA VGVMDLPRPM EGLGEAGPPP FLCKTYEVVD  60
DPGTDTVISW GFAGNSFVVW DANAFAAVLL PRYFKHSNFS SFVRQLNTYG FRKVDPDRWE  120
FANEGFLRGK KELLKTIKRR RPPPSSPPSS SSSSSSSQHQ QQPAAACLEV GQFGRDGVVN  180
RLQRDKSVLI AEVVKLRQEQ QTTRAQMQAM EERISAAEQK QQQMTVFLAR AMKNPGFLQM  240
LVDRQAGQHG ARNRVLEDAL SKKRRRPIEY LLTRNGETCA AGESAAMLAA DGVAEPDGDT  300
TPRGDGGGGG DTESFWMQLL SLGLEEKQRE DGVAGGVQES NSGGADVDND EEDDDDDVDV  360
LVQSIYHLSP NIKKVVPSSS NLGVLRGRSI RLHLYLVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	LKTIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	5e-91	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G33530.1