PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G34520.4

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 186aa MW: 19578.2 Da PI: 8.3464

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G34520.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	54.9	1.8e-17	22	60	21	59
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 p sYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ OGLUM03G34520.4 22 PTSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 60 88**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MSTTTTSIAG HLRAITAMVG PPTSYYRCTN SKCTVKKRVE RSSDDPSVVI TTYEGQHCHH 60 TASFQRGVGG AAVAAHIHGA AAVALAEQMS AFVSPPPQPH MLYGLPRLHP PSSSETAVSC 120 SMPTTTSLQE LNNGEGLQRP GYNNSPQAAV TIAQRPPSPS VPPAVSFDKG LLDDIVPPGI 180 TKTFFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	3e-22	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G34520.4