PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G34950.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 31695.5 Da    PI: 8.1283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G34950.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-102072471055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  OGLUM03G34950.1 207 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 247
                      9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MSQDELQQPG QVQWTPAPEE KSEIAVQFFT APYPFQNGQL DHGEHHALGG IGACSSVHWQ  60
PDRGTCYWPP PLSGDGGGGS GSGSSGTGEG GYIGERCYYV GEPDVPIGLN LLVGDNDGAG  120
VVLRDAAPQA KRRTQAGHGG DLGRQKKKAR VSDKRNQESM QSGSCSDNES NCSQVNRRKV  180
DRVAGGGNGK VPARRRSATI AQSLYARRRR ERINGRLRIL QKLVPNGTKV DISTMLEEAV  240
HYVKFLQLQI KVEVQIVCHD QMLSSDELWM YAPIVYNGMD LGIDLNISPP R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194210RRRSATIAQSLYARRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-35bHLH family protein