PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G35790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 374aa MW: 41630.9 Da PI: 7.9146

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G35790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.2	2e-50	39	174	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s OGLUM03G35790.1 39 LPGFRFHPTDEELVTFYLRRKVARKSLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 131 69*************************.89***********445556889********************************** PP NAM 95 k.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl OGLUM03G35790.1 132 AaataavnsnSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 174 98888887777777*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MVTSKEFARD QAAMDKKIKS NVGEVVLAGD EEEDGDVVLP GFRFHPTDEE LVTFYLRRKV 60 ARKSLSIEII KEMDIYKHDP WDLPKASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGFW 120 KATGIDRPIY SAAATAAVNS NSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAIAA 180 ADASPCMQKA EVWTICRIFK RSITYRKQQQ QQQQAWRPPA PATVTVKAPP PGDSSSNTGS 240 FESDGGGDEF MNCGLTPAIS QQQHGGAGRH QMMSTMSCNG GYFFNDGIHH SHSHHKLHHS 300 QWGSLQMALP APEPKPEPEQ KPLSSPAMTI AFHQNDHGFP AAAADFYKDG YLEEIARMME 360 VADPSPTGFY DCRY

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MVTSKEFARD QAAMDKKIKS NVGEVVLAGD EEEDGDVVLP GFRFHPTDEE LVTFYLRRKV  60
ARKSLSIEII KEMDIYKHDP WDLPKASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGFW  120
KATGIDRPIY SAAATAAVNS NSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAIAA  180
ADASPCMQKA EVWTICRIFK RSITYRKQQQ QQQQAWRPPA PATVTVKAPP PGDSSSNTGS  240
FESDGGGDEF MNCGLTPAIS QQQHGGAGRH QMMSTMSCNG GYFFNDGIHH SHSHHKLHHS  300
QWGSLQMALP APEPKPEPEQ KPLSSPAMTI AFHQNDHGFP AAAADFYKDG YLEEIARMME  360
VADPSPTGFY DCRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-83	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G35790.1