PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G36620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 181aa    MW: 19294.6 Da    PI: 8.2969
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G36620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-37221221101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n +++l++lp +er +a++s++ eA  r++dPvyG++gvi++lq+q++ ++ el
  OGLUM03G36620.1  22 RCAACKFLRRRCSRDCVLAPHFPASDPHRYACVQRVFGAGNTTRMLQQLPAQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQNQIRAAQCEL 115
                      6********************************************************************************************* PP

           DUF260  95 allkeel 101
                      a +++++
  OGLUM03G36620.1 116 AWTHAQI 122
                      **99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MSPGEDDVEA SSDSGGSAII RRCAACKFLR RRCSRDCVLA PHFPASDPHR YACVQRVFGA  60
GNTTRMLQQL PAQERGRAAD SMAAEAYRRV QDPVYGCAGV INRLQNQIRA AQCELAWTHA  120
QIAMHSAAAA AHARTTPPPR ATLPPGQRDG GGVAGAPSST QQATTSAAWP LEDFASEFSF  180
P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.14e-44LBD family protein