PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G37030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 357aa MW: 40242.9 Da PI: 5.8292

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G37030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115	4.7e-36	39	130	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+ OGLUM03G37030.1 39 FLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLK 123 9******************999*************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +ikr+k OGLUM03G37030.1 124 SIKRRKP 130 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MNYRVVNPVK VESGPSTGVA NGQPPRPMDG LADGGPPPFL TKTYDMVDDP TTDAVVSWSA 60 TNNSFVVWDP HLFGNVLLPR YFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQKH 120 LLKSIKRRKP PNSSPSQQSL GSFLEVGHFG YEGEIDQLKR DKHLLMAEVV KLRQEQQNTK 180 SDLQAMEQKL QGTEQKQQHM MAFLARVMHN PEFIRQLFSQ SEMRKELEEF VSKKRRRRID 240 QGPELDSMGT GSSPEQVSQV MFEPHDPVDS LFNGVPSDLE SSSVEANGGK AQQDVASSSS 300 EHGKIKPSNG ELNEDFWEDL LHEGGLDEDT RNPAIDDMNL LSQKMGYLNS SSTKSPQ

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MNYRVVNPVK VESGPSTGVA NGQPPRPMDG LADGGPPPFL TKTYDMVDDP TTDAVVSWSA  60
TNNSFVVWDP HLFGNVLLPR YFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQKH  120
LLKSIKRRKP PNSSPSQQSL GSFLEVGHFG YEGEIDQLKR DKHLLMAEVV KLRQEQQNTK  180
SDLQAMEQKL QGTEQKQQHM MAFLARVMHN PEFIRQLFSQ SEMRKELEEF VSKKRRRRID  240
QGPELDSMGT GSSPEQVSQV MFEPHDPVDS LFNGVPSDLE SSSVEANGGK AQQDVASSSS  300
EHGKIKPSNG ELNEDFWEDL LHEGGLDEDT RNPAIDDMNL LSQKMGYLNS SSTKSPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	LKSIKRR
2	233	238	KKRRRR
3	234	239	KRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-106	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G37030.1