PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G37590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 219aa MW: 22870.9 Da PI: 8.4727

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G37590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.6e-07	147	173	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + OGLUM03G37590.1 147 SHSLAERARREKISERMKILQDLVPGC 173 8************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MDPAPTLAAE LWRTPHLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE 60 APALEDDSSR IVSTSGGGGG GGQDLTDSEA KRFKASKSSG DNSSLRTEAE TDSRNASKSG 120 DQNPPPPEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKFGAQV 180 YNTVPGLTFD PQTPREYAQG STPSEWLHMQ IGGTYERVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-32	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G37590.1