PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G38900.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 170aa MW: 18215.4 Da PI: 8.4104

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G38900.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H OGLUM03G38900.1 55 FVCKTCSRAFPTFQALGGHRTSH 77 89**********99998888877 PP
2	zf-C2H2	12.5	0.00044	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H OGLUM03G38900.1 109 HECHICGLGFEMGQALGGHMRRH 131 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MKHPRQEEEV SLALALSTDC SSTASDSSAA AAGGAARRKR ARRRSVVATS GEGEFVCKTC 60 SRAFPTFQAL GGHRTSHLRG RSNGLDLGAI GDKAIRLHRA ADKEHRDKHE CHICGLGFEM 120 GQALGGHMRR HREEMAAAGG GSSADDWVWR CDARPEGIAA EPPVLLELFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46090.1	9e-20	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G38900.1