PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G38910.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 256aa MW: 26472.6 Da PI: 8.3258

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G38910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H OGLUM03G38910.1 100 HECHICGQGFEMGQALGGHMRRH 122 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MTKHPRDGEV ISLSLSLTLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL 60 GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAATH ECHICGQGFE MGQALGGHMR 120 RHREEAAAAA AAVHAPPVLL ELFGRPLATE HRPRQGGCRG KIAIEVIESR SGGGHRAGPN 180 LEVFELGHVR SGIGATALAV TEESDTRGLG IDGASSCEAL EGGCEADHWS LGRGADGEGE 240 KRAGAGEAED KGIRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	3e-14	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G38910.1