PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G39650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 136aa    MW: 15096.3 Da    PI: 10.5127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G39650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.71e-202761135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  OGLUM03G39650.1 27 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 61
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MDSSSVEKGS GSIDPDERTA SGEPKACTDC HTTKTPLWRG GPSGPKSLCN ACGIRYRKKR  60
REALGLDAGE GGAERQEKKK SKRERGEEVT MELRMVGFGK EVVLKQRRRM RRRRRLGEEE  120
KAAILLMALS SGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15882KKRREALGLDAGEGGAERQEKKKSK
2106112QRRRMRR
3107113RRRMRRR
4108115RRMRRRRR
5108114RRRMRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-27GATA family protein