PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40060.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 212aa    MW: 22867.6 Da    PI: 6.4192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40060.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09129174247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W++eE+ + ++++++ G g+W+ I+ +    Rt+ q+ s+ qky
  OGLUM03G40060.1 129 GPWSEEEHRQCLRGIEEIGHGRWTQISIEYVPSRTPIQIASHSQKY 174
                      89*************************98888************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MGDLVGDGAA PAAAEPAPAA AACRWTRQKD KLLETLVARC AMNRQCVGGW DAIAAAFGDD  60
TTAAQVEQRY GEIAAEVRRV MEEPWDAEDP AIAAAAAAVP AAPVKHAAAG PGSDGGGEEG  120
KVVVEKKSGP WSEEEHRQCL RGIEEIGHGR WTQISIEYVP SRTPIQIASH SQKYFLRMAK  180
PKEDRKRKSI HDTPYHLHLP NAADAHAHQQ QQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-18MYB family protein