PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G40250.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1397aa MW: 155083 Da PI: 5.548

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G40250.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.2e-08	1247	1288	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ OGLUM03G40250.3 1247 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1288 569*****************.*****.******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1397 aa Download sequence
MTLKEDVFIW TSMITAFVQN EHFEKALYLF RELLYTRKET DQFTISSVMS ACAALSVPTT 60 CKQIHCHAVK TGLDQFTVSG NSQIAMYRNI GDLKASKLTF EQISCLDTFS WSAMILSYAV 120 HGYESKALEL FEKMKNLGVM MNEIASLAVL IACSHQGLAD EGLRYYENTI PDDGFSLDVK 180 LKACMVDLLG RVGKIADAED FIMSSGSEND PILWHALLRA CRVHGDKERC TKIGEKLMEL 240 EPFSASSYVM LYNLYMDAGK ISLAMRTRGL MRERGITNEA GISWTDFGGS IHNFIDGDNS 300 CSHNTIHTTL EELLVRVKQK TEHGGTNIWE LEFQSRKLSE SSISRHGELL AVAFGLTTLP 360 SVAPVRVMKN QRISWESHET LKLLSEALIP GRLLPFRLPP LPLPPSPTRS IGKSNASIAF 420 LFFSSRSPPQ TPPIPYPPHT LSVAPPQPPP HPLQRRRSTG LPSIDGVTPR DGWRRRGRAD 480 APRRRSPVGA VAASLHRRPD ESLAPPPIPG LLDPACEQVR NGLFGNPKIC RLGSSSPCAV 540 SRLNRGGGKQ SRGGEGILQL NPHVPSWIRP CLKGVDKLDE SSGDTGHIAM IDDEADFGNI 600 TDATEGQAAA KFHGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV FASVHKVSQN 660 EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE EERVAKFQPK 720 FRVKTSKAAS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTR HQESVQISYS 780 QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE TIDAACVATP 840 EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA TVDLDSHAEM 900 VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP TDTNSETSNS 960 SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY DHVIEQEPER 1020 DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE YTARGKQKGR 1080 RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK DSSVEQPEKK 1140 LTHRIRRKRM EEVKTLLETP DHEIDRMKLS VTHLRLLQEA KERIKASFVG KEIPSGPSSS 1200 NHSTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW SKSETDKFYE 1260 GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSRDN LYFKEVIKKL 1320 NIEDVQPDIN NTHEQEGTSN EEDPGNKNIP GGLINEEENG LDWSDKELDM HRSEVEEKEH 1380 VSTNDDDDDL GDVFDWY

Sequence ? help Back to Top

Protein Sequence Length: 1397 aa Download sequence

MTLKEDVFIW TSMITAFVQN EHFEKALYLF RELLYTRKET DQFTISSVMS ACAALSVPTT  60
CKQIHCHAVK TGLDQFTVSG NSQIAMYRNI GDLKASKLTF EQISCLDTFS WSAMILSYAV  120
HGYESKALEL FEKMKNLGVM MNEIASLAVL IACSHQGLAD EGLRYYENTI PDDGFSLDVK  180
LKACMVDLLG RVGKIADAED FIMSSGSEND PILWHALLRA CRVHGDKERC TKIGEKLMEL  240
EPFSASSYVM LYNLYMDAGK ISLAMRTRGL MRERGITNEA GISWTDFGGS IHNFIDGDNS  300
CSHNTIHTTL EELLVRVKQK TEHGGTNIWE LEFQSRKLSE SSISRHGELL AVAFGLTTLP  360
SVAPVRVMKN QRISWESHET LKLLSEALIP GRLLPFRLPP LPLPPSPTRS IGKSNASIAF  420
LFFSSRSPPQ TPPIPYPPHT LSVAPPQPPP HPLQRRRSTG LPSIDGVTPR DGWRRRGRAD  480
APRRRSPVGA VAASLHRRPD ESLAPPPIPG LLDPACEQVR NGLFGNPKIC RLGSSSPCAV  540
SRLNRGGGKQ SRGGEGILQL NPHVPSWIRP CLKGVDKLDE SSGDTGHIAM IDDEADFGNI  600
TDATEGQAAA KFHGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV FASVHKVSQN  660
EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE EERVAKFQPK  720
FRVKTSKAAS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTR HQESVQISYS  780
QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE TIDAACVATP  840
EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA TVDLDSHAEM  900
VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP TDTNSETSNS  960
SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY DHVIEQEPER  1020
DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE YTARGKQKGR  1080
RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK DSSVEQPEKK  1140
LTHRIRRKRM EEVKTLLETP DHEIDRMKLS VTHLRLLQEA KERIKASFVG KEIPSGPSSS  1200
NHSTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW SKSETDKFYE  1260
GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSRDN LYFKEVIKKL  1320
NIEDVQPDIN NTHEQEGTSN EEDPGNKNIP GGLINEEENG LDWSDKELDM HRSEVEEKEH  1380
VSTNDDDDDL GDVFDWY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-35	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G40250.3