PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 243aa    MW: 26036.3 Da    PI: 8.4692
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS835e-261120241369
             GRAS 241 vveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                      ++eqea+hn++ + e+f+eal+yy+alfd+l  a +   +++r  v ++  g +      ++g +rrerhe+le+W   le aGF+ vpls++a
  OGLUM03G40270.1   1 MTEQEASHNAAGLTEQFVEALNYYAALFDCLrGARV-GGAHARGAVAAQG-GDQ-----EHRGVRRRERHERLERW---LEGAGFGRVPLSYYA 84 
                      68*****************************66666.5556666666662.333.....58999************...789************ PP

             GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                        qa+++ +  + dg+++ ee+g ++l+W+dr+L+s
  OGLUM03G40270.1  85 LLQARRVAQGLGCDGFKIREEKGNFFLCWQDRALFS 120
                      **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MTEQEASHNA AGLTEQFVEA LNYYAALFDC LRGARVGGAH ARGAVAAQGG DQEHRGVRRR  60
ERHERLERWL EGAGFGRVPL SYYALLQARR VAQGLGCDGF KIREEKGNFF LCWQDRALFS  120
SPENAAPAAA PAPAPAPTPA PPPPPSSPPT KSGIPPRYDL DAKWDACLDL SIRRVAYSTL  180
GGTFAGLLLF RSPTTRWASV ALGAGVGIGA AYTECSYLFN GAPPKWSPKV STVPSAHSEG  240
EDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-21GRAS family protein