PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40290.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 242aa    MW: 26084.8 Da    PI: 5.4034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.54e-1781391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pG+ F+P+d+ l++ +L++k+++ ++e  + i+++d+y+++P +L  ++      ++  s+  k++a+g+r++ +  +++Wk+ g +k+v  
  OGLUM03G40290.1   8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHTDVYSADPAELVGEH-RPAPGTHGSSSVCKRKASGRRQRAVGGESVWKSEGGKKAVNG 99 
                      579************************999.89**************7332.223466777777777778888888889*************** PP

              NAM  95 kkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OGLUM03G40290.1 100 ADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 139
                      ********99999966677766889999999*******76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHTDVYSADP AELVGEHRPA  60
PGTHGSSSVC KRKASGRRQR AVGGESVWKS EGGKKAVNGA DGRRVGYLQK FSYGVYESSS  120
SGSARTFTRL GWCMTEYGLD DDATDGADKH VLCKVYRSPR AVCAEARTAA AKCSGYKRKA  180
DDGEDHPEAA PPSARPRQEE AGSEHDEQPE LDLDALLSAP TDENLESTFS TAATAVALAL  240
VV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-13NAC family protein