PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G41290.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 506aa MW: 55353.2 Da PI: 4.6846

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G41290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.8	2.3e-35	38	129	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+ye+++d++++ ++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+ OGLUM03G41290.1 38 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 122 9*******************99*************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k OGLUM03G41290.1 123 TINRRKP 129 ***86 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MEAAVAAAAA AAGAVTTAVA PPPGAAVSNG VATAPPPFLM KTYEMVDDPA TDAVVSWGPG 60 NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LKTINRRKPT HGNNQVQQPQ LPAAPVPACV EVGKFGMEEE IEMLKRDKNV LMQELVRLRQ 180 QQQTTDHQLQ TLGKRLQGME QRQQQMMSFL AKAMHSPGFL AQFVQQNENS RRRIVASNKK 240 RRLPKQDGSL DSESASLDGQ IVKYQPMINE AAKAMLRKIL KLDSSHRFES MGNSDNFLLE 300 NYMPNGQGFD SSSSTRNSGV TLAEVPANSG LPYVATSSGL SALCSTSTPQ IQCPVVLDNG 360 IPKEVPNMSA VPSVPKAVAP GPTDINIPEF PDLQDIVAEE NVDIPGGGFE MPGPEGVFSL 420 PEEDDDSVPI ETDEILYNDD TQKLPAIIDS FWEQFLVASP LSVDNDEVDS GVLDQKETQQ 480 GNGWTKAENM ANLTEQMGLL SSHHTG

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MEAAVAAAAA AAGAVTTAVA PPPGAAVSNG VATAPPPFLM KTYEMVDDPA TDAVVSWGPG  60
NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKTINRRKPT HGNNQVQQPQ LPAAPVPACV EVGKFGMEEE IEMLKRDKNV LMQELVRLRQ  180
QQQTTDHQLQ TLGKRLQGME QRQQQMMSFL AKAMHSPGFL AQFVQQNENS RRRIVASNKK  240
RRLPKQDGSL DSESASLDGQ IVKYQPMINE AAKAMLRKIL KLDSSHRFES MGNSDNFLLE  300
NYMPNGQGFD SSSSTRNSGV TLAEVPANSG LPYVATSSGL SALCSTSTPQ IQCPVVLDNG  360
IPKEVPNMSA VPSVPKAVAP GPTDINIPEF PDLQDIVAEE NVDIPGGGFE MPGPEGVFSL  420
PEEDDDSVPI ETDEILYNDD TQKLPAIIDS FWEQFLVASP LSVDNDEVDS GVLDQKETQQ  480
GNGWTKAENM ANLTEQMGLL SSHHTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-124	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G41290.1