PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G41640.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 221aa    MW: 23690.4 Da    PI: 6.3995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G41640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1876125355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr ++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +++g
  OGLUM03G41640.1  76 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEEAALAYDQAAFAMRG 125
                      79******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSLHPHRRHG DGDVDGSASG SGSARLTAGL INFLESRRAG AMSTTNSSSS VSVPAMDAHG  60
QEEEEEPMQV QQQQAFRGVR KRPWGKFAAE IRDSTRNGVR VWLGTFDSAE EAALAYDQAA  120
FAMRGSAAVL NFPMEQVRRS MDMSLLQEGA SPVVALKRRH SMRAAAAGRR RKSAAPAPAD  180
QEGGGGVMEL EDLGPDYLEE LLAASQPIDI TCCTSPSHHS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157172KRRHSMRAAAAGRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-30ERF family protein