PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G00550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 227aa MW: 24037.2 Da PI: 7.6732

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G00550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	40.7	8.4e-13	146	182	23	59
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaa 59 vsvPs+slfk+vtvrCGhC++ll vn+ ++a OGLUM04G00550.1 146 EVSVPSSSLFKTVTVRCGHCSNLLPVNIGGLLLPTSA 182 69*************************9887665555 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MVDPTSRMRI RPARDGPHCG GHRRLRRQRS WAAASEEEHP SSRSDEQSEE ADEDGDGNAE 60 AVGAAVLLFS PPPPAVAAAT LLLFPSSDEA AAAWEKPRRP SPVAWNLLLQ FIKAGFYAKA 120 SPSFPEFPPN KEVPFQKGCS GHKQVEVSVP SSSLFKTVTV RCGHCSNLLP VNIGGLLLPT 180 SAAATVATAP PPPSPPPPPP AAHFPHSLNL APPANPPHHH SLLVLAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	3e-10	YABBY family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G00550.1