PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G02100.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 159aa MW: 17649.9 Da PI: 8.3939

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G02100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.9e-06	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H OGLUM04G02100.1 46 YTCGYCRREFRSAQALGGHMNVH 68 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MESRSAREHG HGHLHQQHQR PWSCSFGFSW PPLQWSPPPS SSSSSYTCGY CRREFRSAQA 60 LGGHMNVHRR ERARLRQFPN PRPHPLPNLN LSPPPPPPPP PQQQQQCYCP GDRPAVVYSF 120 FSTAAAAMAV TKGLEVDLEL GVGGGMEEGL DLELRLGCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	5e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G02100.1