PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G02300.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 97aa MW: 11279.9 Da PI: 7.9071

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G02300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	39.9	8.7e-13	5	43	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++++C+C ks+C+k+YC C +a +Cs++C+C++CkN+e OGLUM04G02300.1 5 QHRSCRCVKSNCVKLYCPCLSAYGYCSQNCRCTNCKNRE 43 6789*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence
MSNDQHRSCR CVKSNCVKLY CPCLSAYGYC SQNCRCTNCK NREYYEDFVE ERVDMIKMKN 60 PRAFDPKIVR VQDASEIEPQ SSNAVPMPEV QVPRTFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	9e-17	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G02300.1