PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G03150.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 183aa MW: 18788 Da PI: 6.9728

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G03150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.2	2.6e-33	51	130	3	78
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 k ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ +ss OGLUM04G03150.1 51 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavAIGSS 130 577899*********************************************************66666333222211222 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MASSSDLILY NLVPAQPLNP SAIPNPNPDL SIAAAEPPSS DGATPRRVRP RKSPSSSDRH 60 SKVAGRGRRV RIPAMVAARV FQLTRELGHR TDGETIEWLL RQAEPSIIAA TGTGVTPEEA 120 PPAAVAIGSS SVAAAAAAAG HGGAFVHVPY YTALLMQPPN ADEPPMASAA SASGTTAADE 180 NNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	52	RRVRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	8e-28	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G03150.1