PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G06620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 293aa    MW: 31023.8 Da    PI: 4.9279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G06620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-0895133649
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 
                        +Er RR+++N+++  Lr+++P+      +K++Ka+i + A++
  OGLUM04G06620.1  95 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAID 133
                      579*********************7.....7***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSHSS SAPAPAAVGG  60
DAAAAVAGSG GGMMTMMMGG GGGGGDDAGG ANKNILMERD RRRKLNEKLY ALRSVVPNIT  120
KMDKASIIKD AIDPPPRRAP PXAAANPFAG LGADEEYEYG HHPSSSAAAA AERTKKVKRA  180
LSVSSINDAL LAAAAPAPPV EIQELRVSEV GDRVLVVSVT CSKRRDAMAR VCRALEDLRL  240
RVITANITSV AGCLMHTLFV EVDHMDSVQM KQMVEAALSQ LVATGSPLSS MSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-38bHLH family protein