PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G06810.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 199aa MW: 22824.8 Da PI: 10.4357

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G06810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.6	1.2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+ly++ss OGLUM04G06810.1 9 KRIDNTTNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSS 59 79***********************************************96 PP
2	K-box	68.7	1.9e-23	84	171	12	99
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++a+ +q+e++ L+++++nL +++R+llGe++++ ++++Lq L++q+e s+ +iR+kK l+ ++ +el+kk + ++++n +L+kkl+ OGLUM04G06810.1 84 SEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSIHSIRNKKGSLVQKENSELRKKFNIAHQHNIELHKKLN 171 6789*********************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MGRGKIAIKR IDNTTNRQVT FSKRRGGLMK KARELAILCD ADVGLIVFSC TGRLYDFSSS 60 SMKSIIERYQ EAGEEHCRLL NPMSEAKFWQ REVTTLRQQV QNLHHNNRQL LGEEISNFTV 120 RDLQLLQNQV EMSIHSIRNK KGSLVQKENS ELRKKFNIAH QHNIELHKKL NSGESTSSEQ 180 VTRSSKDPGE SSTPRDSRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	7e-72	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G06810.1