PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 142aa    MW: 14370.2 Da    PI: 7.5092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.2e-1620114399
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      kvl+ps+  k   +++  + a++   gg  ++  t ++ ++ g+ W+v + +r ++g+ +l++GW eF+ a+gL +g fvv+++ g  ++ l v
  OGLUM04G08100.1  20 KVLVPSSFRK---MRICDELAAQLgvGGGAPRAATARVASPLGKAWDVGV-VRDGDGGAFLGRGWAEFAAAHGLGVGWFVVLRHGGGGGGVLAV 109
                      5665555544...578899998889966667889****************.577777789***********************99989999999 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f++
  OGLUM04G08100.1 110 EAFDT 114
                      99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MGSRGDHGGG GGAARATQLK VLVPSSFRKM RICDELAAQL GVGGGAPRAA TARVASPLGK  60
AWDVGVVRDG DGGAFLGRGW AEFAAAHGLG VGWFVVLRHG GGGGGVLAVE AFDTTCCLRE  120
FGAPPAAHFY FALEAFSHDG EC