PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08130.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 280aa    MW: 31818.1 Da    PI: 9.6215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08130.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.4e-1610861796
                     E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k ++++++++GW +F + +g+  gD+v+F+++g+  f  +++v
  OGLUM04G08130.1 10 RIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDRSGVFFGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 86
                     69*********555567889999************..*******************************9986666..5555 PP
2B378.66.4e-25174268185
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...........-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...........rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvF 82 
                      ++k++++++vl++++l+l ++f+e++ + +e+s+tl++ d+++           rsWev+   r+++++ y+l++GW++F+++ng+++gD++vF
  OGLUM04G08130.1 174 WIKKEINEYVLERCILSLARTFCESIALAEESSITLMMIDTTStqgdqggssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCVF 265
                      789*************************************99999****************..9999999************************ PP

                      EE- CS
               B3  83 kld 85 
                      ++ 
  OGLUM04G08130.1 266 TVL 268
                      954 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MHISLPFLQR IPDKFVRDYI TGENLNSNMA IILSPLGKSW RVELDKDRSG VFFGGGWLQF  60
LSFHGISRGD VVIFRYEGNL VFKISVFGPN GRQKDFKAKG ISIHQGTGEQ QEAPSFSRRK  120
CNNKKKSRFG EDDGNQQEMP CSRKGSGNKG RTSDRETKRM RKTRSVYEIG PRSWIKKEIN  180
EYVLERCILS LARTFCESIA LAEESSITLM MIDTTSTQGD QGGSSSSRSW EVTGRRYKDA  240
CYLLGAGWRR FCEDNGVRSG DVCVFTVLDT SLWRVDIERC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.14e-14B3 family protein