PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08150.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 146aa    MW: 15005.1 Da    PI: 8.7752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08150.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-1422121399
                      EE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                      kvl+ps+ +k +   ++ + a++          gg     +  ++ ++ g+ W+v++  ++ +++  +l++GW eF+ a+gL +g fvv +++g
  OGLUM04G08150.1  22 KVLMPSSFHKMH---ISDELAAHLlgergdgggGGA--ARRAARVVSPVGKIWDVEVGRDGDGDGgAFLGRGWAEFAAAHGLGVGWFVVVRHEG 110
                      777777777655...888888555999999974333..44589**************6644444479************************755 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                        ++ l+vk+f++
  OGLUM04G08150.1 111 --GGVLTVKLFDT 121
                      ..7778***9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MPGDHAGAGA AVGAAAKAMQ LKVLMPSSFH KMHISDELAA HLLGERGDGG GGGAARRAAR  60
VVSPVGKIWD VEVGRDGDGD GGAFLGRGWA EFAAAHGLGV GWFVVVRHEG GGVLTVKLFD  120
TTCCLKDFAA PPAGNRSKDY LHAKFK