PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08780.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23657.5 Da    PI: 10.1186
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.33.5e-071438630
                     HHHHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  6 ksnrqvtfskRrngilKKAeELSvL 30
                     + +r vtf kR++g+ KK +E  +L
  OGLUM04G08780.1 14 DVKRRVTFMKRLKGLTKKVSEFATL 38
                     679******************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MAHKKVKLQR IIIDVKRRVT FMKRLKGLTK KVSEFATLFL MVYGEVEVQA TMVWPSVWEA  60
TRVLEHFNAM PHLDRYKKMT DLERILNEQV DKLKEQLHKV GHDANESETK LLLIEAINGR  120
RPSLEGLTIE QITSLGWMAN AHLKIVNDRL KKLHEEGLIP ASVSLSGTEV PTQREGWLMD  180
VARGIGSMGY NRFRGSSGSG TAGYNGDMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-17M-type_MADS family protein