PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G09140.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 188aa    MW: 20817 Da    PI: 10.0339
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G09140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.12.4e-241056457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +Y++C++NhAa+lG++a DGC+E++p+       ++l CaACgCHRnFHR++ 
  OGLUM04G09140.1 10 EVYRKCMRNHAAKLGTYANDGCCEYTPN-------DGLLCAACGCHRNFHRKDF 56
                     68*************************8.......79***************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MEQQQERPQE VYRKCMRNHA AKLGTYANDG CCEYTPNDGL LCAACGCHRN FHRKDFLDGR  60
ATAATVSAGV PGRLRMHQCC RPPVEAGCRD TCTWRRWVAE SLTAAAGTAR LRREAADAQT  120
KFTKEQKARM LRFAERLGWR IAGARQRTQG RRCGAFLLPP APAATSILLP PPPLPPDLAD  180
GRALMPGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-22ZF-HD family protein