PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10060.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 212aa    MW: 22326.2 Da    PI: 6.2715
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10060.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-1296176489
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 
                      ++ +s+v    ++v+p++fa      + ++ t    + +grsW +++  ++++    l++GW++F+ +n+L+ gD +vF+l  g  +
  OGLUM04G10060.1  96 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 176
                      677899999999********433...3333.44446789********..88888899***********************5423222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI  60
AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS  120
RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER  180
VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID