PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28324 Da    PI: 6.9468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.6e-131153244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     rie+  +r + f kR++g+ KKAe L vLCda v  +++s +g
  OGLUM04G10110.1 11 RIEDRVRRGICFRKRLAGLEKKAEKLAVLCDAHVGFVVLSCSG 53
                     8**************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEKLAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATIENI VERYEHSQAA QKGVHGRCIL QKRKSKDFQV LKETIDKGPI NDDMRPIDEK  120
DISTLNMDQI SQIEILLEDE LRWTRARKVV ADRIARLQKK VQKKPATAET ESNSTEMPSD  180
HEKKQVAGGS QQSAEEEEEE EEEMEVVLRH RLSLGTGDRD DGGGGAAEQR HRTTPPPPVD  240
LNVPCRDAGQ LQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-19MIKC_MADS family protein