PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G10170.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 988aa MW: 110542 Da PI: 6.2529

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G10170.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177	2.4e-55	11	127	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np f OGLUM04G10170.2 11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCF 104 67779*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 qrrc+w+Le ++e+ivlv+y+ev OGLUM04G10170.2 105 QRRCFWMLEPAYEHIVLVQYREV 127 *******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF 60 RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV 120 LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS 180 SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRRVDN SNSTNKSGLN 240 RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEEM 300 QNGLGRGIPS SWEDSTPHYP QNSEYQPPGS LYNSDMQQIS AAKRFLLETE DSIDSPSYNY 360 VPREEGNNGT NTLSVHDYSL QSSLNPDWKK TAPLTLQSNL YGSEIPSLLL DHGQFESLSS 420 GENTRLILGQ NPRFSIREVS PEWTYCYEIT KVIITGDFLC DPSSSCWAVM FGDSEVPAEI 480 VQAGVLRCHT PLHSSGKLTI CVTSGNREIC SEVKDFEFRA KSTASSFLDI SPSSRSLKSS 540 EELLLLAKFV RMLLCENGSH ANSNGDPQSV QCPKLKMNDE HWQRLIDELK GGCENPLNVS 600 DWIMEELLKS KLQQWLSVKL QGYDGIACSL SKHEQGIIHL ISALGYEWAL SSILSADVGI 660 NFRDTNGWTA LHWAAYFGRE KMVAALLAAG ASAPAVTDPT AQDPVGKTAA FLASEWGHLG 720 LAAYLSEVSL TSYLASLTIQ ESDTSKGSAA AEAERAVESI SQRNAQLHGG TEDELSLKDS 780 LAAVRNAAQA AARIQNAFRA FSFRKRQQKT ARLKDEYGMT QEDIDELAAA SRSYYQSLLP 840 NGQFYDKAAV SIQKKFKGWK GRRHFLNMRR NAVKIQAHVR GHQVRKKYKT FVSTVSVLEK 900 VILRWRRKGH GLRGFRAEQT AMAEAEEDDE DDDDDDFNDD EAVKVFRRQK VDESVKEAMS 960 RVLSMVDSPE ARMQYRRMLE EFRQATAE

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence

MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS  180
SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRRVDN SNSTNKSGLN  240
RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEEM  300
QNGLGRGIPS SWEDSTPHYP QNSEYQPPGS LYNSDMQQIS AAKRFLLETE DSIDSPSYNY  360
VPREEGNNGT NTLSVHDYSL QSSLNPDWKK TAPLTLQSNL YGSEIPSLLL DHGQFESLSS  420
GENTRLILGQ NPRFSIREVS PEWTYCYEIT KVIITGDFLC DPSSSCWAVM FGDSEVPAEI  480
VQAGVLRCHT PLHSSGKLTI CVTSGNREIC SEVKDFEFRA KSTASSFLDI SPSSRSLKSS  540
EELLLLAKFV RMLLCENGSH ANSNGDPQSV QCPKLKMNDE HWQRLIDELK GGCENPLNVS  600
DWIMEELLKS KLQQWLSVKL QGYDGIACSL SKHEQGIIHL ISALGYEWAL SSILSADVGI  660
NFRDTNGWTA LHWAAYFGRE KMVAALLAAG ASAPAVTDPT AQDPVGKTAA FLASEWGHLG  720
LAAYLSEVSL TSYLASLTIQ ESDTSKGSAA AEAERAVESI SQRNAQLHGG TEDELSLKDS  780
LAAVRNAAQA AARIQNAFRA FSFRKRQQKT ARLKDEYGMT QEDIDELAAA SRSYYQSLLP  840
NGQFYDKAAV SIQKKFKGWK GRRHFLNMRR NAVKIQAHVR GHQVRKKYKT FVSTVSVLEK  900
VILRWRRKGH GLRGFRAEQT AMAEAEEDDE DDDDDDFNDD EAVKVFRRQK VDESVKEAMS  960
RVLSMVDSPE ARMQYRRMLE EFRQATAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-149	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G10170.2