PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G11190.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 88aa MW: 10229.6 Da PI: 6.767

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G11190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.4	3.6e-12	45	87	45	87
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 + ++lp +++ d++sslvyeA+ ++rdPvy +v+ i+ lq+ql OGLUM04G11190.1 45 IRQELPVQQQGDTVSSLVYEANDWMRDPVYDCVRAISFLQNQL 87 668999***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence
MLIKDYLYHV HSDFIHGKAR LYLQQCGRRD QRVKLPTCAG GSEEIRQELP VQQQGDTVSS 60 LVYEANDWMR DPVYDCVRAI SFLQNQLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-15	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G11190.1