PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G13050.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 173aa    MW: 19540.9 Da    PI: 6.7321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G13050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-0799122126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C++ ++C+FaH+
  OGLUM04G13050.1  99 YGVEVCRDYLK-NMCNR-ESCRFAHP 122
                      899********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MVCRDFTRGR CSRSANECRF LHHSPLEDCA IVCQDFLRGR CDRKSCRYSH VMAHPMPPPM  60
RDIPMQYPDM VYMPPPAPLG VPMMMPPPSA PAAFSGNNYG VEVCRDYLKN MCNRESCRFA  120
HPDLNNEFAV ILSEENAIDL PVAFTIHLQA QILLDKVNIE CPALLPLLPL CCC