PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G13520.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 20920.5 Da    PI: 8.8324
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G13520.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45.2e-251058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++gk+ye +
  OGLUM04G13520.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVLSPHGKIYELA 58
                     8*********************************************965 PP
2K-box57.55.9e-20881711597
            K-box  15 eslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++l+ ++ie l++ke  l+ +n  L+++
  OGLUM04G13520.1  88 MVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 171
                      45799*********************868**************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVLSP HGKIYELATN  60
GNMEGLIERY KSNLPEAQVE RTEQNIPMVI QQDVLFLRRE VDLLQNSLRY MYGEKDINHM  120
NLGELQSLES NLEVWVNNIR STKMQLMSRE IEMLKNKEGI LKAANDILQE RVLLAINSCI  180
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-55MIKC_MADS family protein