PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G13590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 850aa MW: 93821.1 Da PI: 6.9041

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G13590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.6e-52	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk OGLUM04G13590.1 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKC 102 69**************************.99**********963433332566******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +++g++ktLvfy+grap+g+ktdW+mheyrle OGLUM04G13590.1 103 IRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139 9.8999****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ 180 GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP 240 PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD 300 GDQAAAAAAG STDQQQWQAM DGFSNGGAGA AAAVQQQLGA MSSGQRGGEM DLWGYGRLTF 360 YIFGNASPSN LTQASYIIEA FQKCHVDHPV KKFFGECTDL KIKLDQCFRQ EKALKRKANF 420 EESKKFKEHT VGSPIADIDC KSCSRNKDNY VICPFKFQVN QDTRTSRGAG EREKMDPVPL 480 FNPCEMGRFT FSHRIVLAPL TRARSYGNLP QSHAILYYSQ RATKGGLLIS EATGVSSDAP 540 CTNTPGIWTK EQVEAWKPVV DAVHAKGGIF FCQIWHVGRA SDLEQEPISS TDKPVEKNED 600 MDFPVPRRLA VEEIPDVINH FRIAARNAID AGFDGVEVHG AHGFLLEQFM KDGVNDRADE 660 YGGSLQNRCR FALEVIDAVS TEVGPDRVGF RISPYISYYG CHDSDPDALG VYMARELDRR 720 GVLYCSAVEP EMVAATTVVD GETTTTTMSR RMMIPHRLHG MREAFRRGMF MVGGGYDRDA 780 GNMAVASGYA DMVVFGRLFL ANPDLPRRFQ LDAPLNKYDR ATFYTHDPVV GYTDYPFLDD 840 DREAMSDHTG

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ  180
GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP  240
PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD  300
GDQAAAAAAG STDQQQWQAM DGFSNGGAGA AAAVQQQLGA MSSGQRGGEM DLWGYGRLTF  360
YIFGNASPSN LTQASYIIEA FQKCHVDHPV KKFFGECTDL KIKLDQCFRQ EKALKRKANF  420
EESKKFKEHT VGSPIADIDC KSCSRNKDNY VICPFKFQVN QDTRTSRGAG EREKMDPVPL  480
FNPCEMGRFT FSHRIVLAPL TRARSYGNLP QSHAILYYSQ RATKGGLLIS EATGVSSDAP  540
CTNTPGIWTK EQVEAWKPVV DAVHAKGGIF FCQIWHVGRA SDLEQEPISS TDKPVEKNED  600
MDFPVPRRLA VEEIPDVINH FRIAARNAID AGFDGVEVHG AHGFLLEQFM KDGVNDRADE  660
YGGSLQNRCR FALEVIDAVS TEVGPDRVGF RISPYISYYG CHDSDPDALG VYMARELDRR  720
GVLYCSAVEP EMVAATTVVD GETTTTTMSR RMMIPHRLHG MREAFRRGMF MVGGGYDRDA  780
GNMAVASGYA DMVVFGRLFL ANPDLPRRFQ LDAPLNKYDR ATFYTHDPVV GYTDYPFLDD  840
DREAMSDHTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	8e-76	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G13590.1