PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G14880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27473.1 Da    PI: 9.2889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G14880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsst++lyey+s
  OGLUM04G14880.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLVIFSSTDRLYEYAS 59
                     8***********************************************86 PP
2K-box912.2e-3075170398
            K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +++++++ +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq Le+qLe s++ iR+kK++l++++i+el +k   +++en++L +
  OGLUM04G14880.1  75 EQQHVANPNSELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKELQTLENQLEMSIRCIRTKKDQLMIDEIHELNRKGSLIHQENMELYR 168
                      56667788999**********************************************************************************9 PP

            K-box  97 kl 98 
                      k+
  OGLUM04G14880.1 169 KV 170
                      97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLVIFSS TDRLYEYAST  60
SMKSVIDRYG RAKEEQQHVA NPNSELKFWQ REAASLRQQL HNLQENHRQL MGQDLSGLGV  120
KELQTLENQL EMSIRCIRTK KDQLMIDEIH ELNRKGSLIH QENMELYRKV NLIRQENAEL  180
YKKLYETGAE TEANRDSTTP YNFGVIEEAN TPARLELNPP SQQNDAEQTA PPKLGQKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-97MIKC_MADS family protein