PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16020.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 362aa    MW: 40163.9 Da    PI: 5.0462
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.22.1e-29592002128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d e++ e+L++k++  +      ++ +   ++ v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+          
  OGLUM04G16020.1  59 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEGVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 150
                      88**********99.99****998887887764443444777778**********.66778899*******************76776666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  OGLUM04G16020.1 151 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 200
                      4678************.99************996777889*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MARPWIIAGG KVIATKIRNA TQLLSCKLGE LVPEAWRECP NCKCHIDNSD VTLQWPEFPD  60
GVKFDPSDLE VLEHLERKIN LGNPGPQGLI DHFIPTLEGV EGICYTHPEN LPGIKLDGTS  120
SHFFHRISNA YGSGQRKRRK ISHTGHAASD ENIRWHKTGK SKQIYHNGVL KGWKKILVLY  180
KGSKKNKIVQ ANWVMHQYNL GVEEGGEDGE LVVSKVFYQL SSKQTGTPEM DSVTEEASDA  240
LTIRSDPITP ITNPPLPRCL MNSPCDTEQN GTISHDQEGE CSTSTLRPTV EPGNRAGCSA  300
GASTAGDFDE DLLQRCEFPG DPVPTLDDTL PFLYTDETDL FSWEDFQFGS QESFGWVDGD  360
HT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136162RKRRKISHTGHAASDENIRWHKTGKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-62NAC family protein