PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16790.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 172aa    MW: 18677.1 Da    PI: 9.3303
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16790.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07143162626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C +f++ G C++Gd C FaHg
  OGLUM04G16790.1 143 CLDFRK-GGCNHGDACEFAHG 162
                      999999.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MTESTKIKYC RADSGSGSGS KPLSAETKTR LMADGKKIDE EKKDGTAVRR VLFWFAVLVI  60
RFALLMAMHY YHVRMMAKLE GTNNDGFGLF LTCSHYDVTS SRCDGARAGG ARTGRSALSR  120
VRGRRRGGGT PDTRPYCDSG TACLDFRKGG CNHGDACEFA HGVFDNSSAD LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-11C3H family protein