PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G19130.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 206aa MW: 21968.9 Da PI: 10.9191

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G19130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.8e-34	51	168	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas.....nsss 87 +++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c + s+s OGLUM04G19130.1 51 ATQGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapS----TASSSfllgkR--- 137 556679********************************************************88888544432221....22222222221... PP TCP 88 g.............................k 89 + + OGLUM04G19130.1 138 PrqedheaptfwealqqqprpavsswgalvS 168 0333443344444444444443333333331 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MASRDAATFQ VYRPMAMPTP AALPPSSQQI TMPFTAAPVD AVLPAPRKAA ATQGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS 120 CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV 180 AQVHHLNLLS ALSGAATRRP AQEESR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-37	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G19130.1