PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 450aa    MW: 49366.2 Da    PI: 7.3131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  OGLUM04G20450.1  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                     ****************55555***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR  60
ASKLKPPTLK LKEQKQPKKN PSHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC  120
APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSQM EKLAKDLNSI MHEEQLLYLS  180
GSSEEDLIYH SATPVDSFEM GYGSMLLRPN SKSLEEESEA SSIPADNKSY ITSESYSGSV  240
SFVYSESKAT SNQNVITEQP KKFLVQTSDN ARRANLHTEN QDTLENANSP LVSLHMEGKD  300
SEETRVKTSA SNLLTKSTMN PLKRPHDTHF QSSVELRGTM RSPKRVSKYG DAMGLKCQAL  360
FMPKPGNGKD LACSDRALNL FMLPPDKLTM LVPPQYANND SDQDLLLDVP LNARHPEAEL  420
LCQPSQLSSV AHSSTSEGGN AGGEGRLKQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-60GATA family protein