PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G20930.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1018aa MW: 107146 Da PI: 6.579

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G20930.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	112	129	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ H OGLUM04G20930.1 112 VCKNCGKEFTSWEHFLEH 129 7**************999 PP
2	zf-C2H2	12.2	0.00054	653	674	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C ++F ++ L H+r+H OGLUM04G20930.1 653 TCKLCYRRFGNPRALAGHMRSH 674 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence
MQPSPSSPRA PPPTAAQASG YKHFCRVCNK GFTCGSALGG HMRAHGVGDG DGLGADDDDD 60 DDDDSLGDEA VRRARGGADD PWNAGGPSSS GAATHVYELR TNPNRVTRSR QVCKNCGKEF 120 TSWEHFLEHG KCSSGEDDDD EDDVDRSLQP WSPSPEADGE EDPAPASGWL KGKRSRRCKG 180 TGVDLSPTPS ACAAGEEEDL ANCLVMLSSS KVYQAGVTEA EQPSSSSASK EHKRLITFME 240 PTTYVLDTVM ALPPPAPAPQ YVSTVPRGMF ECKACKKVFS SHQALGGHRA SHKKVKGCFA 300 AKLESNAAEV AEPSHHAEVA ERSEDNPGKA TSDARRNVHA SMDGDGNTGT SDAAAELSMA 360 IVPIEPPVAA LAAAPLKKKG KMHECSVCHR LFTSGQALGG HKRCHWLTSS SADHTASVPP 420 LADDLVPLSF RPMLDAPEPA LDLSIAANPP LLASAATVRP KVGGSSFHLD APPPVYIPSS 480 PAIPSQRNKA TATTGSQNAN DAVGLSTAAA EDEADSTTVK RARLSDLKDV SMAGETTPWL 540 QVGIGSSSRG GADDNDKEDF GRVTYPTSSQ GSGKVGDRDQ EQNKDSTKMT EKKKEGEARS 600 NSREIKNKMR LDLDGHNSER SADEMHACWP GTRSPKLCAS SSSIQALAMA KNTCKLCYRR 660 FGNPRALAGH MRSHSVAASR SQISSTSSAS TSVAVGDDDG GGDAKRPIQG YVLREKPKRR 720 VRLAESDFSD RESETEYYSS PPHGKRANTG SGDVEQVSSV SDAATSEEDV ALSLMMLSRD 780 TWPATPPPPP PYRLRGAGYD DGSDGGDAPP APAAAAAQKR TRFQCPACKK VFRSYQALGG 840 HRASHMRGGR GGCCAPPPNP PPSPATPLQP LPECDGGEEE GAKPHPHECP YCFRVFASGQ 900 ALGGHKRSQL CSAAAAAASG DDLPATIKSN GFIDLNLPAP FDDVELSAVS DPFLSSKPAI 960 LVPTVHGTGF GQTIGEIELL STFGGQVVIS MAHVSRPRGT VLFSSLGPPG LHRRVSGH

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence

MQPSPSSPRA PPPTAAQASG YKHFCRVCNK GFTCGSALGG HMRAHGVGDG DGLGADDDDD  60
DDDDSLGDEA VRRARGGADD PWNAGGPSSS GAATHVYELR TNPNRVTRSR QVCKNCGKEF  120
TSWEHFLEHG KCSSGEDDDD EDDVDRSLQP WSPSPEADGE EDPAPASGWL KGKRSRRCKG  180
TGVDLSPTPS ACAAGEEEDL ANCLVMLSSS KVYQAGVTEA EQPSSSSASK EHKRLITFME  240
PTTYVLDTVM ALPPPAPAPQ YVSTVPRGMF ECKACKKVFS SHQALGGHRA SHKKVKGCFA  300
AKLESNAAEV AEPSHHAEVA ERSEDNPGKA TSDARRNVHA SMDGDGNTGT SDAAAELSMA  360
IVPIEPPVAA LAAAPLKKKG KMHECSVCHR LFTSGQALGG HKRCHWLTSS SADHTASVPP  420
LADDLVPLSF RPMLDAPEPA LDLSIAANPP LLASAATVRP KVGGSSFHLD APPPVYIPSS  480
PAIPSQRNKA TATTGSQNAN DAVGLSTAAA EDEADSTTVK RARLSDLKDV SMAGETTPWL  540
QVGIGSSSRG GADDNDKEDF GRVTYPTSSQ GSGKVGDRDQ EQNKDSTKMT EKKKEGEARS  600
NSREIKNKMR LDLDGHNSER SADEMHACWP GTRSPKLCAS SSSIQALAMA KNTCKLCYRR  660
FGNPRALAGH MRSHSVAASR SQISSTSSAS TSVAVGDDDG GGDAKRPIQG YVLREKPKRR  720
VRLAESDFSD RESETEYYSS PPHGKRANTG SGDVEQVSSV SDAATSEEDV ALSLMMLSRD  780
TWPATPPPPP PYRLRGAGYD DGSDGGDAPP APAAAAAQKR TRFQCPACKK VFRSYQALGG  840
HRASHMRGGR GGCCAPPPNP PPSPATPLQP LPECDGGEEE GAKPHPHECP YCFRVFASGQ  900
ALGGHKRSQL CSAAAAAASG DDLPATIKSN GFIDLNLPAP FDDVELSAVS DPFLSSKPAI  960
LVPTVHGTGF GQTIGEIELL STFGGQVVIS MAHVSRPRGT VLFSSLGPPG LHRRVSGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	382	LKKKGKM
2	716	722	KPKRRVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	2e-27	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G20930.1