PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G21350.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 446aa MW: 49049.5 Da PI: 4.6896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G21350.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	3.8e-13	372	418	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++llP+ +K++Ka+iL +++ Y+k L OGLUM04G21350.1 372 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 418 5899*********************7.....6*************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK 60 TRKISNLEDL TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV 120 CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT 180 DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSPDETED ADTVFDGLIE EDQMVILQGE 240 DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAAAAA 300 NDVDGVAYSH ASCFVSWKRA NPAEKVVAVP MTAGIESQKL LKKAVGGGTA WMSNIDGRGS 360 VAITTTPGSS IKSHVMSERR RREKLNEMFL ILKSLLPSVR KVDKASILAE TITYLKVLEK 420 RVKELESSSR EPSRWRPTEI GQGKAP

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDL TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV  120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT  180
DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSPDETED ADTVFDGLIE EDQMVILQGE  240
DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAAAAA  300
NDVDGVAYSH ASCFVSWKRA NPAEKVVAVP MTAGIESQKL LKKAVGGGTA WMSNIDGRGS  360
VAITTTPGSS IKSHVMSERR RREKLNEMFL ILKSLLPSVR KVDKASILAE TITYLKVLEK  420
RVKELESSSR EPSRWRPTEI GQGKAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	383	ERRRRE
2	379	384	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	7e-67	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G21350.1