PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G21940.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 645aa MW: 66777.2 Da PI: 8.5656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G21940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM04G21940.1 129 FVCEVCNKGFQREQNLQLHRRGH 151 89*******************88 PP
2	zf-C2H2	11.5	0.00096	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + OGLUM04G21940.1 206 WKCDKCSKRYAVQSDWKAHSKIC 228 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQQQ QQLAASLTGV ATAAPTAASS 60 QGAPPAAPPA KKKRNLPGNP SNQPKYPFTI SAMHAYISVL RDLVSIDWTD PDAEVIALSP 120 KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPAQAQRRRV YLCPEPTCVH 180 HDPARALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL 240 FSRRDSFITH RAFCDALAQE SSRLPPTSLS NLTSHLYGAS NAGNMALSLS QVGSHLTTSL 300 QDGGGHHHHP SPELLRLGGA GGGGGAGGGS SIAARLDHLL SPSGASAFRP PQPAFFLNAA 360 AAAAATGQDF GDDAGNGQHS FLQAKPFHGL MQLPDLQGNG AGGPGAPGPN LFNLGFFANN 420 GNSSGSSHEH ASQGLMSNDQ FSGGAGGGGG SDASAAGIFG GNFVGGDHVS PAGLYNDQAA 480 MLPQMSATAL LQKAAQMGAT SSANGPGSMF RGFVGSSPHM RPAAQHMDQS DAHLNDLMNS 540 LAGGGVNAAA MFGGTNGGGV PGAGMFDPRL CDIEHEVKFS QGGGGGGGAG AGTGDGTRDF 600 LGVGGGGIVH GMSTPRGDHH QSSSDMSSLE AEMKSASSFN GRRMP

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQQQ QQLAASLTGV ATAAPTAASS  60
QGAPPAAPPA KKKRNLPGNP SNQPKYPFTI SAMHAYISVL RDLVSIDWTD PDAEVIALSP  120
KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPAQAQRRRV YLCPEPTCVH  180
HDPARALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL  240
FSRRDSFITH RAFCDALAQE SSRLPPTSLS NLTSHLYGAS NAGNMALSLS QVGSHLTTSL  300
QDGGGHHHHP SPELLRLGGA GGGGGAGGGS SIAARLDHLL SPSGASAFRP PQPAFFLNAA  360
AAAAATGQDF GDDAGNGQHS FLQAKPFHGL MQLPDLQGNG AGGPGAPGPN LFNLGFFANN  420
GNSSGSSHEH ASQGLMSNDQ FSGGAGGGGG SDASAAGIFG GNFVGGDHVS PAGLYNDQAA  480
MLPQMSATAL LQKAAQMGAT SSANGPGSMF RGFVGSSPHM RPAAQHMDQS DAHLNDLMNS  540
LAGGGVNAAA MFGGTNGGGV PGAGMFDPRL CDIEHEVKFS QGGGGGGGAG AGTGDGTRDF  600
LGVGGGGIVH GMSTPRGDHH QSSSDMSSLE AEMKSASSFN GRRMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G21940.1