PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G22100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 868aa    MW: 92831.1 Da    PI: 5.4443
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G22100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.81.7e-22122177156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k
  OGLUM04G22100.1 122 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 177
                      688999***********************************************998 PP
2START140.91.3e-443335992206
                      HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGG.....CT-TT- CS
            START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddke.....qWdetl 76 
                      la +a++elvk+a+ ++p+W   +        es+n +e+l +f++  +     + +ea+r+sg+v+ +  a lve+l+d  e     +W+ ++
  OGLUM04G22100.1 333 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDEFEflrqrRWSDMF 426
                      67899***************9766667999****************9999**************998651568********************* PP

                      S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEE CS
            START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgili 154
                           ka+t+e is+g      gal lm+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+    +      s   + +++lpSg+++
  OGLUM04G22100.1 427 ScmiaKASTTEEISTGvagsrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVL 520
                      *****************************************************************9987666666454555689********** PP

                      EEECTCE...........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 155 epksngh...........................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++ng                              vtwveh++++++++h l+r+l++sgla ga +w atlqrqce+
  OGLUM04G22100.1 521 QDTPNGFvkylvqisvfsevynlsidqfldlppaFMVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 599
                      *********************************99******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    
MSFGVGDHFG DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGLNSG GGGKMVTAAH  60
GGVGGGGGGG RAKARDALEV ENEMSRSGSD HLDVVSCGDA GGGGGDDDDD EDAEHGNPPK  120
RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RAELSKRLGL EPRQVKFWFQ NRRTQMKMQL  180
ERHENALLKQ ENDKLRSENL SIREATSNAV CVGCGGPAML GEVSLEEHHL RVENARLKDE  240
LSRVCALAAK FLGKSISVMA PPQMHQPHPV PGSSLELAVG GIGSMPSATM PISTITDFAG  300
AMSSSMGTVI TPMKSEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGDP LWIPGASVPS  360
SPAKESLNFE EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDGAALVETL MDEFEFLRQR  420
RWSDMFSCMI AKASTTEEIS TGVAGSRNGA LLLMQAELQV LSPLVPIREV KFLRFSKQLA  480
DGVWAVVDVS ADELMRDQGI TSASSTANMN CRRLPSGCVL QDTPNGFVKY LVQISVFSEV  540
YNLSIDQFLD LPPAFMVTWV EHTEYDEASV HPLYRPLLRS GLALGAGRWI ATLQRQCECL  600
ALLMSSIALP ENDSSAIHPE GKRSMLKLAR RMTDNFCAGV STSSTREWSK LVGLTGNIGE  660
DVHVMARKSV DEPGTPPGVV LSAATSVWMP VMPERLFNFL HNKGLRAEWD ILSNGGPMQE  720
VTSIAKGQQN GNTVCLLKAS SSVPLTKNFT VQPTKDKQNS MLILQETCAD ASGSMVVYAP  780
VDIPAMHLVM SGGDSSCVAL LPSGFAILPA GPSIGADHKM GGSLLTVAFQ ILANSQPSAK  840
LTVESVETVS NLISCTIKKI KTALHCDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein